Early childhood is a critical window during which the gutmicrobiota—an immense community of microorganisms living in the digestivetract—helps shape lifelong health. Emerging evidence suggests that early-lifemicrobial patterns may influence metabolic development, immunity, and the riskof later disease. However, large-scale population-based data on gut microbiotacomposition in early childhood are still limited. This project will leveragetwo major French birth cohorts (ELFE and EPIPAGE 2) to explore how early-lifefactors shape microbiota development at 3.5 years of age.
Study Aim
The aim of this study is to identify gut microbiotasignatures in preschool-aged children and to investigate how perinatalconditions, early health indicators, and growth parameters may influence theestablishment of these microbial communities. Ultimately, the study seeks tobetter understand whether early-life microbiota patterns correlate with laterhealth outcomes.
Scientific Approach
The project will gather and analyse stool samples fromchildren enrolled in the ELFE and EPIPAGE 2 cohorts. The microbiota compositionwill be analysed using 16S rRNA metagenomic sequencing. Subsequently, theassociations between microbial patterns and early-life clinical parameters,including gestational age, birth mode, and early BMI trajectories, will beevaluated.
Expected Outcomes
The study is expected to map the gut microbiota landscape ofyoung children in two major French cohorts, and explore potential associationsbetween microbiota composition and early growth or perinatal factors, pave thusthe way for understanding how microbiota development at childhood may shapelong-term health.

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